SQL Ingest

⚠️

SQL Ingest is an experimental feature.

You can inject database content, collected by your data warehouse, by pulling the result of a given query into Pachyderm and saving it as a CSV or JSON file.

Before You Start #

• You should be familiar with Jsonnet.
• You should be familiar with creating Jsonnet pipeline specs in Pachyderm.
• You should be familiar with managing Kubernetes secrets.

How to Set Up SQL Ingest #

1. Create & Upload a Secret #

You must generate a secret that contains the password granting user access to the database; you will pass the username details through the database connection string in step 2.

1. Copy the following:

   kubectl create secret generic yourSecretName --from-literal=PACHYDERM_SQL_PASSWORD=yourDatabaseUserPassword --dry-run=client --output=json > yourSecretFile.json

   
2. Swap out yourSecretName, yourDatabaseUserPassword, and yourSecretFile with relevant inputs.
3. Open a terminal and run the command.
4. Copy the following:

   pachctl create secret -f yourSecretFile.json

   
5. Swap out yourSecretfile with relevant filename.
6. Run the command.
7. Confirm secret by running pachctl list secret.

ℹ️

Not all secret formats are the same. For a full walkthrough on how to create, edit, and view different types of secrets, see Create and Manage Secrets in Pachyderm.

2. Create a Database Connection String #

Pachyderm’s SQL Ingest requires a connection string defined as a Jsonnet URL parameter to connect to your database; the URL is structured as follows:

<protocol>://<username>@<host>:<port>/<database>?<param1>=<value1>&<param2>=<value2>

3. Create a Pipeline Spec #

Pachyderm provides a default Jsonnet template that has key parameters built in. To use it, you must pass an argument for each parameter.

1. Copy the following:

   pachctl update pipeline --jsonnet https://raw.githubusercontent.com/pachyderm/pachyderm/2.6.x/src/templates/sql_ingest_cron.jsonnet \
     --arg name=<pipelineName> \
     --arg url="<connectionStringToDdatabase>" \
     --arg query="<query>" \
     --arg hasHeader=<boolean> \
     --arg cronSpec="<pullInterval>" \
     --arg secretName="<youSecretName>" \
     --arg format=<CsvOrJson> 
     --arg outputFile='<fileName>'

   
2. Swap out all of the parameter values with relevant inputs.
3. Open terminal.
4. Run the command.

4. View Query & Results #

• To View Query String: pachctl inspect pipeline <pipelineName>
• To View Output File Name: pachctl list file <pipelineName>@master
• To View Output File Contents: pachctl get file <pipelineName>@master:/0000

Example: Snowflake #

In this example, we are leveraging Snowflake’s support for queries traversing semi-structured data (here, JSON).

1. Create a secret with your password named snowflakeSecret.
2. Create a Snowflake specific database connection URL using the following details:
   • Protocol: snowflake
   • Username: username
   • Host: VCNYTW-MH64356 (account name or locator)
   • Database: SNOWFLAKE_SAMPLE_DATA
   • Schema: WEATHER
   • Warehouse: COMPUTE_WH

   snowflake://username@VCNYTW-MH64356/SNOWFLAKE_SAMPLE_DATA/WEATHER?warehouse=COMPUTE_WH

   
3. Build query for the table DAILY_14_TOTAL using information from column V.

   select T, V:city.name, V:data[0].weather[0].description as morning, V:data[12].weather[0].description as pm FROM DAILY_14_TOTAL LIMIT 1

   
4. Define the pipeline spec by populating all of the parameter values:

   pachctl update pipeline --jsonnet https://raw.githubusercontent.com/pachyderm/pachyderm/2.6.x/src/templates/sql_ingest_cron.jsonnet \
   --arg name=mysnowflakeingest \
   --arg url="snowflake://username@VCNYTW-MH64356/SNOWFLAKE_SAMPLE_DATA/WEATHER?warehouse=COMPUTE_WH" \
   --arg query="select T, V:city.name, V:data[0].weather[0].description as morning, V:data[12].weather[0].description as pm FROM DAILY_14_TOTAL LIMIT 1" \
   --arg hasHeader=true \
   --arg cronSpec="@every 30s" \
   --arg secretName="snowflakeSecret" \
   --arg format=json

5. Run the command.

How Does This Work? #

SQL Ingest’s Jsonnet pipeline spec, sql_ingest_cron.jsonnet, creates all of the following:

• 1 Input Data Repo: Used to store timestamp files at the cronSpec’s set interval rate (--arg cronSpec="pullInterval" \) to trigger the pipeline.
• 1 Cron Pipeline: Houses the spec details that define the input type and settings and data transformation.
• 1 Output Repo: Used to store the data transformed by the cron pipeline; set by the pipeline spec’s pipeline.name attribute, which you can define through the Jsonnet parameter --arg name=outputRepoName \.
• 1 Output File: Used to save the query results (JSON or CSV) and potentially be used as input for a following pipeline.

In the default Jsonnet template, the file generated is obtainable from the output repo, outputRepoName@master:/0000. The filename is hardcoded, however you could paramaterize this as well using a custom Jsonnet pipeline spec and passing --arg outputFile='0000'. The file’s contents are the result of the query(--arg query="query") being ran against the database--arg url="connectionStringToDdatabase" ; both are defined in the transform.cmd attribute.

About SQL Ingest Pipeline Specs #

To create an SQL Ingest Jsonnet Pipeline spec, you must have a .jsonnet file and several parameters:

pachctl update pipeline --jsonnet https://raw.githubusercontent.com/pachyderm/pachyderm/2.6.x/src/templates/sql_ingest_cron.jsonnet \
  --arg name=<pipelineName> \
  --arg url="<connectionStringToDdatabase>" \
  --arg query="<query>" \
  --arg hasHeader=<boolean> \
  --arg cronSpec="<pullInterval>" \
  --arg secretName="<secretName>" \
  --arg format=<CsvOrJson> 

• The name of each pipeline (and their related input/output repos) are derived from the name parameter (--arg name=<pipelineName>).

Parameters #

URL Parameter Details #

<protocol>://<username>@<host>:<port>/<database>?<param1>=<value1>&<param2>=<value2>

• Passwords are not included in the URL; they are retrieved from a secret.
• The additional parameters after ? are optional and needed on a case-by-case bases (for example, Snowflake).

Snowflake #

Pachyderm supports two connection URL patterns to query Snowflake:

snowflake://username@<account_identifier>/<db_name>/<schema_name>?warehouse=<warehouse_name>
snowflake://username@hostname:port/<db_name>/<schema_name>?account=<account_identifier>&warehouse=<warehouse_name>

The account_identifier takes one of the following forms for most URLs:

• Option 1 - Account Name:organization_name-account_name.
• Option 2 - Account Locator: account_locator.region.cloud.

Formats & SQL Data Types #

The following comments on formatting reflect the state of this release and are subject to change.

Formats #

Numeric #

All numeric values are converted into strings in your CSV and JSON.

⚠️

• Note that infinite (Inf) and not a number (NaN) values will also be stored as strings in JSON files.
• Use this format #.# for all decimals that you plan to egress back to a database.

Date/Timestamps #

Strings #

💡

When parsing your CSVs in your user code, remember to escape " with "".

Supported Data Types #

Some of the Data Types listed in this section are specific to a particular database.